STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemZ_1Oxygen-independent coproporphyrinogen-III oxidase 2. (497 aa)    
Predicted Functional Partners:
hemZ_2
Oxygen-independent coproporphyrinogen-III oxidase 2.
  
  
 
0.813
SCJ31831.1
Hydroxyacylglutathione hydrolase.
       0.781
SCJ56939.1
Methylcobalamin:coenzyme M methyltransferase.
  
 
 0.759
SCJ81630.1
Methylcobalamin:coenzyme M methyltransferase.
  
 
 0.759
relA
GTP pyrophosphokinase.
  
    0.637
miaB_2
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB.
 
  
 0.537
luxQ_1
Autoinducer 2 sensor kinase/phosphatase luxQ.
    
 0.527
argS
Arginine--tRNA ligase.
   
    0.521
rimO
Ribosomal protein S12 methylthiotransferase RimO.
 
   
 0.518
rlmN_1
Ribosomal RNA large subunit methyltransferase N.
  
   
 0.511
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.