STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bglB_1Thermostable beta-glucosidase B. (934 aa)    
Predicted Functional Partners:
SCJ88414.1
Uncharacterized protein with a bacterial SH3 domain homologue.
    
  0.810
cwlC
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
 
  0.698
celC
Endoglucanase C.
 
  
 0.662
SCJ32519.1
Cellobiose phosphorylase.
 
  
 0.629
ytfL
Putative Mg2+ and Co2+ transporter CorB.
 
     0.563
exo
Beta-hexosaminidase.
    
 0.556
SCJ37344.1
Murein transglycosylase C.
    
  0.556
ykfC_2
Gamma-D-glutamyl-L-lysine endopeptidase.
    
  0.556
ykfC_3
Gamma-D-glutamyl-L-lysine endopeptidase.
    
  0.556
SCJ55542.1
Reducing end xylose-releasing exo-oligoxylanase.
  
  
 0.548
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.