STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCJ59984.1Chromosome segregation protein. (1063 aa)    
Predicted Functional Partners:
ydgH
Putative membrane protein ydgH.
   
 0.955
pstS
Phosphate-binding protein pstS precursor.
     
 0.771
znuB
High-affinity zinc uptake system membrane protein znuB.
    
  0.768
yvdT
Uncharacterized HTH-type transcriptional regulator yvdT.
 
  
 0.748
SCJ57393.1
ABC-2 family transporter protein.
  
 
  0.544
SCJ66324.1
ABC-type transport system involved in multi-copper enzyme maturation%2C permease component.
  
 
  0.544
oppA_1
Stage 0 sporulation protein KA.
  
  
  0.529
hisJ
Histidine-binding periplasmic protein precursor.
  
  
  0.521
SCJ88204.1
Uncharacterized protein conserved in bacteria.
  
     0.502
SCJ88211.1
Uncharacterized protein conserved in bacteria.
  
     0.486
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.