STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCJ63265.1Uncharacterised protein. (111 aa)    
Predicted Functional Partners:
SCJ63228.1
Uncharacterised protein.
 
     0.956
SCJ63283.1
DNA repair protein RadA.
 
     0.955
SCJ63247.1
Site-specific tyrosine recombinase XerC.
 
     0.946
SCJ63210.1
Helix-turn-helix domain.
 
     0.883
SCJ63301.1
Uncharacterised protein.
       0.547
SCJ44171.1
Predicted permeases.
  
     0.512
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.