STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tplPSP1 C-terminal conserved region. (306 aa)    
Predicted Functional Partners:
SCJ73693.1
Putative methyltransferase.
 
    0.879
rny
Ribonuclease Y.
 
  
 0.867
dnaX_1
DNA polymerase III subunit tau.
  
   0.839
rsmI
Ribosomal RNA small subunit methyltransferase I.
  
    0.795
SCJ73744.1
Guanylate kinase.
       0.668
speA_2
Arginine decarboxylase.
  
    0.612
pyrK_1
Dihydrdoorotate oxidase B%2C electron transfer subunit.
 
    0.448
ghrA
Glyoxylate/hydroxypyruvate reductase A.
       0.429
yggS
Predicted enzyme with a TIM-barrel fold.
 
     0.403
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.