STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCJ78661.1Uncharacterised protein. (783 aa)    
Predicted Functional Partners:
SCJ78747.1
Uncharacterised protein.
  
 0.904
alaS
Alanine--tRNA ligase.
   
 0.890
SCJ73744.1
Guanylate kinase.
 
 
  0.872
htpG
High temperature protein G.
   
 0.870
SCJ82822.1
Uncharacterised protein.
 
 0.865
SCJ78648.1
Colicin V production protein.
 
     0.840
hyaD_1
Hyaluronan synthase.
 
 0.816
SCJ75987.1
Uncharacterised protein.
 
  
 0.814
rpoA
DNA-directed RNA polymerase subunit alpha.
   
 0.789
cph2_1
Bacteriophytochrome cph2.
    
 0.779
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.