SCJ82579.1 protein (uncultured Lachnospira sp.)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SCJ82579.1

Bacterial extracellular solute-binding protein. (556 aa)

Predicted Functional Partners:

ycjP_29

0.791

SCJ13045.1

0.773

ugpA_20

0.772

SCJ82590.1

0.734

SCJ85393.1

0.731

lipO_4

0.711

ugpC_1

0.707

ugpC_2

0.707

ugpA_15

0.696

ugpA_4

0.674

Your Current Organism:

uncultured Lachnospira sp.

NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCJ13045.1	SCJ82579.1	SAMEA3545430_00768	SAMEA3545430_02859	Maltose-binding periplasmic proteins/domains.	Bacterial extracellular solute-binding protein.	0.773
SCJ13045.1	lipO_4	SAMEA3545430_00768	SAMEA3545430_01525	Maltose-binding periplasmic proteins/domains.	Lipoprotein lplA.	0.650
SCJ13045.1	ugpA_15	SAMEA3545430_00768	SAMEA3545430_02235	Maltose-binding periplasmic proteins/domains.	Sn-glycerol-3-phosphate transport system permease protein ugpA.	0.657
SCJ13045.1	ugpA_20	SAMEA3545430_00768	SAMEA3545430_02858	Maltose-binding periplasmic proteins/domains.	Sn-glycerol-3-phosphate transport system permease protein ugpA.	0.500
SCJ13045.1	ugpA_4	SAMEA3545430_00768	SAMEA3545430_00766	Maltose-binding periplasmic proteins/domains.	Sn-glycerol-3-phosphate transport system permease protein ugpA.	0.920
SCJ13045.1	ugpC_1	SAMEA3545430_00768	SAMEA3545430_01856	Maltose-binding periplasmic proteins/domains.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC.	0.707
SCJ13045.1	ugpC_2	SAMEA3545430_00768	SAMEA3545430_02896	Maltose-binding periplasmic proteins/domains.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC.	0.707
SCJ13045.1	ycjP_29	SAMEA3545430_00768	SAMEA3545430_02857	Maltose-binding periplasmic proteins/domains.	Inner membrane ABC transporter permease protein ycjP.	0.593
SCJ82579.1	SCJ13045.1	SAMEA3545430_02859	SAMEA3545430_00768	Bacterial extracellular solute-binding protein.	Maltose-binding periplasmic proteins/domains.	0.773
SCJ82579.1	SCJ82590.1	SAMEA3545430_02859	SAMEA3545430_02860	Bacterial extracellular solute-binding protein.	Uncharacterized response regulatory protein SA0215.	0.734
SCJ82579.1	SCJ85393.1	SAMEA3545430_02859	SAMEA3545430_03068	Bacterial extracellular solute-binding protein.	Maltose-binding periplasmic proteins/domains.	0.731
SCJ82579.1	lipO_4	SAMEA3545430_02859	SAMEA3545430_01525	Bacterial extracellular solute-binding protein.	Lipoprotein lplA.	0.711
SCJ82579.1	ugpA_15	SAMEA3545430_02859	SAMEA3545430_02235	Bacterial extracellular solute-binding protein.	Sn-glycerol-3-phosphate transport system permease protein ugpA.	0.696
SCJ82579.1	ugpA_20	SAMEA3545430_02859	SAMEA3545430_02858	Bacterial extracellular solute-binding protein.	Sn-glycerol-3-phosphate transport system permease protein ugpA.	0.772
SCJ82579.1	ugpA_4	SAMEA3545430_02859	SAMEA3545430_00766	Bacterial extracellular solute-binding protein.	Sn-glycerol-3-phosphate transport system permease protein ugpA.	0.674
SCJ82579.1	ugpC_1	SAMEA3545430_02859	SAMEA3545430_01856	Bacterial extracellular solute-binding protein.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC.	0.707
SCJ82579.1	ugpC_2	SAMEA3545430_02859	SAMEA3545430_02896	Bacterial extracellular solute-binding protein.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC.	0.707
SCJ82579.1	ycjP_29	SAMEA3545430_02859	SAMEA3545430_02857	Bacterial extracellular solute-binding protein.	Inner membrane ABC transporter permease protein ycjP.	0.791
SCJ82590.1	SCJ82579.1	SAMEA3545430_02860	SAMEA3545430_02859	Uncharacterized response regulatory protein SA0215.	Bacterial extracellular solute-binding protein.	0.734
SCJ82590.1	ycjP_29	SAMEA3545430_02860	SAMEA3545430_02857	Uncharacterized response regulatory protein SA0215.	Inner membrane ABC transporter permease protein ycjP.	0.478