STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCJ88757.1Uncharacterised protein. (129 aa)    
Predicted Functional Partners:
SCJ88746.1
IS66 Orf2 like protein.
 
     0.824
SCJ88730.1
Transposase and inactivated derivatives.
 
     0.706
SCJ30152.1
Plasmid segregation protein ParM.
  
  0.635
SCJ83910.1
Transposase IS66 family.
 
     0.571
SCJ31464.1
Site-specific recombinase XerD.
  
     0.565
rsmB
Ribosomal RNA small subunit methyltransferase B.
  
    0.533
SCJ31264.1
RNA polymerase sigma factor.
  
   0.509
SCJ86290.1
Signal peptidase I.
  
 
  0.503
SCJ31430.1
Site-specific tyrosine recombinase XerC.
  
     0.500
dnaK_1
Heat shock protein 70.
   
  0.483
Your Current Organism:
uncultured Lachnospira sp.
NCBI taxonomy Id: 446043
Other names: u. Lachnospira sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.