STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_0172PFAM: integrase family protein; KEGG: sus:Acid_5994 phage integrase family protein; Belongs to the 'phage' integrase family. (437 aa)    
Predicted Functional Partners:
Amir_0174
KEGG: rso:RSc2483 hypothetical protein.
     0.894
Amir_0173
TIGRFAM: DNA binding domain protein, excisionase family.
     
 0.839
Amir_0175
Hypothetical protein.
       0.773
Amir_5647
PFAM: integrase family protein; KEGG: bce:BC1272 DNA integration/recombination/invertion protein; Belongs to the 'phage' integrase family.
 
 
 
 0.627
Amir_0176
Hypothetical protein.
  
    0.556
Amir_6364
PFAM: integrase family protein; KEGG: bce:BC1272 DNA integration/recombination/invertion protein; Belongs to the 'phage' integrase family.
  
     0.538
Amir_0177
PFAM: cell divisionFtsK/SpoIIIE; KEGG: bac:BamMC406_0006 cell divisionFtsK/SpoIIIE.
 
     0.450
Amir_0923
Hypothetical protein.
 
   
 0.431
Amir_3733
PFAM: Bifunctional DNA primase/polymerase; KEGG: bbt:BBta_1244 putative phage / plasmid primase P4.
 
     0.409
Amir_1238
Hypothetical protein.
  
     0.407
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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