STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_0394PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: xca:xccb100_4271 phosphopyruvate hydratase. (470 aa)    
Predicted Functional Partners:
Amir_0397
PFAM: amidohydrolase 2; KEGG: mes:Meso_1610 amidohydrolase 2.
 
  
 0.994
Amir_0396
PFAM: aldo/keto reductase; KEGG: xac:XAC4184 oxidoreductase.
    0.947
Amir_0393
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: rle:RL0016 putative FAA hydrolase family protein.
 
  
 0.925
Amir_0395
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: bpe:BP1923 short chain dehydrogenase.
 
     0.915
Amir_0391
PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: slo:Shew_1116 ATPase, BadF/BadG/BcrA/BcrD type.
 
    0.666
Amir_4793
PFAM: amidohydrolase 2; KEGG: hypothetical protein; K07046.
 
   
 0.597
Amir_0398
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: beta-lactamase; KEGG: bcz:pE33L466_0099 D-stereospecific peptide hydrolase.
  
    0.585
Amir_1070
Hypothetical protein; KEGG: CG13731.
  
     0.575
Amir_2387
PFAM: RbsD or FucU transport; KEGG: csa:Csal_0367 RbsD or FucU transport; Belongs to the RbsD / FucU family.
 
     0.538
Amir_0392
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: glo:Glov_1721 peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.
       0.537
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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