STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_0500PFAM: polysaccharide lyase family 8; polysaccharide lyase 8 alpha-helical; KEGG: vvy:VVA1636 hypothetical protein. (533 aa)    
Predicted Functional Partners:
Amir_0499
PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: lpp:lpp1608 hypothetical protein.
       0.554
Amir_3801
Hypothetical protein; KEGG: scl:sce8552 putative terpene cyclase.
  
   
 0.482
Amir_3958
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: sde:Sde_0943 ribosomal protein S5.
      
 0.468
Amir_5221
Hypothetical protein; KEGG: acp:A2cp1_3940 TPR repeat-containing protein.
  
     0.452
Amir_6391
Hypothetical protein.
 
     0.430
Amir_6715
Hypothetical protein; KEGG: hch:HCH_01837 fibronectin type III domain- containing protein.
  
   
 0.422
Amir_4822
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: hypothetical protein.
 
     0.403
Amir_2174
KEGG: xcv:XCV1806 hypothetical protein.
 
     0.402
Amir_0445
PFAM: CutC family protein; KEGG: bcj:BCAL0655 CutC family protein; Belongs to the CutC family.
  
     0.400
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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