STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_0591KEGG: swi:Swit_5328 hypothetical protein. (1192 aa)    
Predicted Functional Partners:
Amir_0590
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: swi:Swit_5329 phosphoadenosine phosphosulfate reductase.
 
     0.962
Amir_0592
KEGG: swi:Swit_5327 hypothetical protein.
 
     0.962
Amir_0595
KEGG: rpe:RPE_2170 hypothetical protein.
 
     0.789
Amir_0594
PFAM: type III restriction protein res subunit; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: nha:Nham_3708 helicase-like.
 
    0.710
Amir_0593
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: afw:Anae109_1098 aminotransferase class V.
 
     0.679
Amir_3317
Beta-lactamase class A-like protein; KEGG: eli:ELI_05955 putative beta-lactamase.
  
     0.526
Amir_5693
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
       0.506
Amir_6163
PFAM: protein of unknown function DUF262; KEGG: xau:Xaut_2248 hypothetical protein.
       0.453
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.