STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_0598PFAM: integrase family protein; KEGG: cjd:JJD26997_0344 phage integrase. (283 aa)    
Predicted Functional Partners:
Amir_1821
KEGG: sit:TM1040_2323 hypothetical protein.
  
     0.534
Amir_0174
KEGG: rso:RSc2483 hypothetical protein.
 
     0.513
Amir_1116
Hypothetical protein.
 
    0.477
Amir_1292
Hypothetical protein.
 
    0.460
Amir_1993
PFAM: protein of unknown function DUF1469; KEGG: gbm:Gbem_1384 protein of unknown function DUF1469.
  
     0.447
Amir_5295
PFAM: regulatory protein TetR; KEGG: mno:Mnod_1181 transcriptional regulator, TetR family.
  
     0.437
Amir_1107
KEGG: ade:Adeh_3797 hypothetical protein.
  
     0.423
Amir_3882
PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: hypothetical protein.
  
     0.413
Amir_4118
Hypothetical protein; KEGG: mxa:MXAN_7127 FG-GAP repeat protein.
  
     0.409
Amir_4082
KEGG: pau:PA14_51770 hypothetical protein.
  
     0.408
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.