STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_0680Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bbt:BBta_6951 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (332 aa)    
Predicted Functional Partners:
Amir_0678
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpt:Bpet2850 ABC transporter inner membrane protein.
 0.999
Amir_0677
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1184 dipeptide ABC transporter, permease protein.
 
 0.994
Amir_0679
KEGG: mrd:Mrad2831_4369 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 
0.987
Amir_0676
4-phytase; PFAM: extracellular solute-binding protein family 5; KEGG: bsu:BSU11430 oligopeptide ABC transporter (binding protein).
 
 
 0.986
Amir_0763
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mes:Meso_1833 binding-protein-dependent transport systems inner membrane component.
 
 0.977
Amir_3464
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6084 ABC transporter, permease.
 
 0.975
Amir_3068
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1327 dipeptide ABC transporter, permease protein.
 
 0.969
Amir_4718
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gme:Gmet_1236 binding-protein dependent transport system inner membrane protein.
 
 0.969
Amir_4322
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_4834 putative ABC transporter (permease protein).
 
 0.966
Amir_0208
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3642 dipeptide ABC transporter (permease).
 
 0.954
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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