STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_0805Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: sil:SPO1565 citrate lyase, putative; Belongs to the HpcH/HpaI aldolase family. (319 aa)    
Predicted Functional Partners:
Amir_6551
PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_7148 putative long-chain fatty acid-- CoA ligase.
 
      0.711
mtnB
Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily.
   
    0.670
Amir_1862
PFAM: class II aldolase/adducin family protein; KEGG: cko:CKO_03636 L-ribulose-5-phosphate 4- epimerase.
   
    0.670
Amir_3731
PFAM: class II aldolase/adducin family protein; KEGG: hiq:CGSHiGG_08670 putative aldolase.
   
    0.670
Amir_6735
PFAM: AMP-dependent synthetase and ligase; KEGG: mno:Mnod_7251 AMP-dependent synthetase and ligase.
 
      0.664
Amir_1492
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.661
Amir_0801
PFAM: protein of unknown function DUF1003; KEGG: ppf:Pput_1917 hypothetical protein.
       0.643
Amir_0802
PFAM: MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: gur:Gura_2041 MgtE intracellular region.
       0.643
purD
KEGG: ccs:CCNA_00299 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; Belongs to the GARS family.
     
 0.635
Amir_0804
Hypothetical protein.
       0.634
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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