STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_0853PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: aci:ACIAD2864 putative methyltransferase. (111 aa)    
Predicted Functional Partners:
Amir_0852
PFAM: UvrD/REP helicase; KEGG: ank:AnaeK_0104 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
       0.676
Amir_0865
PFAM: NUDIX hydrolase; NADH pyrophosphatase-like; Zinc ribbon NADH pyrophosphatase; KEGG: xcv:XCV0537 NUDIX hydrolase family protein.
 
     0.549
Amir_1729
PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: dps:DP2177 hypothetical protein.
     
 0.545
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.