STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_0903PFAM: protein of unknown function DUF397. (64 aa)    
Predicted Functional Partners:
Amir_0902
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
       0.773
Amir_0900
PFAM: Radical SAM domain protein; KEGG: rpd:RPD_4322 radical SAM family protein.
       0.505
Amir_0901
Hypothetical protein.
       0.505
Amir_0899
SMART: AAA ATPase; KEGG: rme:Rmet_4896 SMC protein-like protein.
       0.498
Amir_0898
PFAM: aminoglycoside phosphotransferase.
       0.495
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.