STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_0970PFAM: extracellular solute-binding protein family 1; KEGG: smd:Smed_3329 extracellular solute-binding protein family 1. (428 aa)    
Predicted Functional Partners:
Amir_0971
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K02025 multiple sugar transport system permease protein.
 
   0.961
Amir_0972
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04137 putative transport system permease ABC transporter protein.
 
 
 0.959
Amir_0974
PFAM: protein of unknown function DUF718; KEGG: bcm:Bcenmc03_6232 L-rhamnose 1-epimerase.
 
     0.792
Amir_0973
KEGG: acp:A2cp1_3283 hypothetical protein.
       0.773
Amir_1807
PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_1009 putative sugar transport sugar binding protein.
  
     0.700
Amir_2172
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU30170 hypothetical protein.
 
 
 0.677
Amir_1980
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU07120 transmembrane lipoprotein.
 
 
 0.674
Amir_1981
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.
 
  
 0.633
Amir_2171
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0484 transmembrane lipoprotein.
 
  
 0.633
Amir_5530
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: NAD binding Rossmann fold oxidoreductase; K00540.
  
     0.626
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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