STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1013PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: sal:Sala_3160 senescence marker protein-30 (SMP-30). (278 aa)    
Predicted Functional Partners:
Amir_6432
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: hypothetical protein.
  
 
  0.903
Amir_5943
PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: bid:Bind_3440 IclR family transcriptional regulator.
      0.883
Amir_5478
PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: bha:BH2137 IclR family transcriptional regulator.
      0.882
Amir_1486
PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: bpt:Bpet4676 IclR family transcriptional regulator.
      0.788
Amir_1485
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; KEGG: pst:PSPTO_1053 hypothetical protein.
 
     0.760
Amir_5059
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: mmr:Mmar10_0223 mannitol dehydrogenase.
 
   
 0.565
Amir_1014
PFAM: Rhomboid family protein; KEGG: amc:MADE_01334 rhomboid-like protein.
       0.482
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.482
Amir_5060
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: eca:ECA0917 putative starvation sensing mandelate racemase / muconate lactonizing enzyme.
 
   
 0.474
Amir_1016
PFAM: beta-lactamase domain protein; KEGG: dal:Dalk_3435 beta-lactamase domain protein.
  
    0.456
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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