STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1048Hypothetical protein; KEGG: gbm:Gbem_1481 transglycosylase-associated protein. (90 aa)    
Predicted Functional Partners:
Amir_6232
KEGG: mxa:MXAN_4195 hypothetical protein.
  
     0.636
Amir_6122
PFAM: protein of unknown function DUF397.
  
     0.598
Amir_1943
PFAM: protein of unknown function DUF397.
  
     0.558
Amir_3762
PFAM: SpoOM family protein; KEGG: vha:VIBHAR_02077 hypothetical protein.
  
     0.548
Amir_1049
KEGG: Hypothetical protein CBG18987.
       0.543
Amir_1597
PFAM: SpoOM family protein; Arrestin-like-like; KEGG: shm:Shewmr7_2729 SpoOM family protein.
  
     0.510
Amir_7051
KEGG: rce:RC1_0389 hypothetical protein.
  
     0.473
Amir_1050
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: sfu:Sfum_2797 DNA-cytosine methyltransferase.
       0.458
Amir_1051
TIGRFAM: DNA mismatch endonuclease Vsr; PFAM: DNA mismatch endonuclease vsr; KEGG: ajs:Ajs_2197 putative very short patch repair protein.
       0.444
Amir_1798
KEGG: afw:Anae109_0147 hypothetical protein.
  
     0.439
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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