STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1071PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: bcm:Bcenmc03_0217 TPR repeat-containing protein. (331 aa)    
Predicted Functional Partners:
Amir_0910
TIGRFAM: methyltransferase FkbM family; KEGG: pzu:PHZ_c0476 hypothetical protein.
  
 
   0.688
Amir_1564
KEGG: met:M446_2019 hypothetical protein.
  
     0.561
Amir_6444
Chromosome segregation ATPase-like protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.551
Amir_6867
KEGG: hypothetical protein.
  
 
   0.546
Amir_1403
Hypothetical protein.
  
     0.537
Amir_2278
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: bid:Bind_3201 TPR repeat-containing protein.
  
     0.534
Amir_0163
PFAM: protein of unknown function DUF1089; KEGG: sme:SMc03980 hypothetical protein.
  
     0.521
Amir_6872
KEGG: predicted protein.
 
     0.513
Amir_1070
Hypothetical protein; KEGG: CG13731.
       0.493
Amir_0560
KEGG: hch:HCH_05440 small integral membrane protein.
 
     0.492
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.