Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Amir_1110 | Amir_1111 | Hypothetical protein. | Hypothetical protein. | 0.773 |
Amir_1110 | Amir_1112 | Hypothetical protein. | Hypothetical protein. | 0.773 |
Amir_1110 | Amir_1113 | Hypothetical protein. | PFAM: cell divisionFtsK/SpoIIIE; KEGG: abu:Abu_1159 cell division protein FtsK. | 0.554 |
Amir_1110 | Amir_1114 | Hypothetical protein. | PFAM: transcription factor WhiB. | 0.554 |
Amir_1110 | Amir_1115 | Hypothetical protein. | Hypothetical protein. | 0.527 |
Amir_1110 | Amir_1116 | Hypothetical protein. | Hypothetical protein. | 0.524 |
Amir_1111 | Amir_1110 | Hypothetical protein. | Hypothetical protein. | 0.773 |
Amir_1111 | Amir_1112 | Hypothetical protein. | Hypothetical protein. | 0.779 |
Amir_1111 | Amir_1113 | Hypothetical protein. | PFAM: cell divisionFtsK/SpoIIIE; KEGG: abu:Abu_1159 cell division protein FtsK. | 0.559 |
Amir_1111 | Amir_1114 | Hypothetical protein. | PFAM: transcription factor WhiB. | 0.554 |
Amir_1111 | Amir_1115 | Hypothetical protein. | Hypothetical protein. | 0.527 |
Amir_1111 | Amir_1116 | Hypothetical protein. | Hypothetical protein. | 0.524 |
Amir_1112 | Amir_1110 | Hypothetical protein. | Hypothetical protein. | 0.773 |
Amir_1112 | Amir_1111 | Hypothetical protein. | Hypothetical protein. | 0.779 |
Amir_1112 | Amir_1113 | Hypothetical protein. | PFAM: cell divisionFtsK/SpoIIIE; KEGG: abu:Abu_1159 cell division protein FtsK. | 0.554 |
Amir_1112 | Amir_1114 | Hypothetical protein. | PFAM: transcription factor WhiB. | 0.554 |
Amir_1112 | Amir_1115 | Hypothetical protein. | Hypothetical protein. | 0.527 |
Amir_1112 | Amir_1116 | Hypothetical protein. | Hypothetical protein. | 0.524 |
Amir_1113 | Amir_1110 | PFAM: cell divisionFtsK/SpoIIIE; KEGG: abu:Abu_1159 cell division protein FtsK. | Hypothetical protein. | 0.554 |
Amir_1113 | Amir_1111 | PFAM: cell divisionFtsK/SpoIIIE; KEGG: abu:Abu_1159 cell division protein FtsK. | Hypothetical protein. | 0.559 |
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