STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1176PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: pca:Pcar_2585 Fe-S oxidoreductase. (655 aa)    
Predicted Functional Partners:
Amir_1185
Conserved hypothetical protein; KEGG: glo:Glov_0470 radical SAM domain protein.
    0.977
Amir_6254
Hypothetical protein.
  
     0.688
Amir_1900
PFAM: protein of unknown function DUF344; KEGG: tgr:Tgr7_0141 hypothetical protein.
   
    0.665
Amir_1174
PFAM: ABC-2 type transporter; KEGG: hha:Hhal_0239 ABC-2 type transporter, NodJ family.
       0.664
Amir_1173
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mgm:Mmc1_3306 ABC transporter related.
       0.661
Amir_1175
PFAM: ABC-2 type transporter; KEGG: afr:AFE_3235 ABC-2 type transporter, permease protein, NodJ family.
       0.661
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.605
rimO
MiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
 
     0.532
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.