STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1329PFAM: Conserved TM helix repeat-containing protein; KEGG: pfo:Pfl01_1775 TM helix protein. (297 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.560
Amir_5590
PFAM: membrane-bound metal-dependent hydrolase; KEGG: gbe:GbCGDNIH1_1245 predicted membrane-bound metal-dependent hydrolase.
  
     0.514
Amir_4643
PFAM: glycosyl transferase family 2; KEGG: bcm:Bcenmc03_0849 glycosyl transferase family protein.
 
     0.479
Amir_0370
TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: glycoside hydrolase 15-related; trehalose- phosphatase; KEGG: nmu:Nmul_A2309 glycoside hydrolase 15-like protein.
 
  
 0.464
Amir_6110
TIGRFAM: regulatory protein, FmdB family; KEGG: mgm:Mmc1_2457 putative regulatory protein, FmdB family.
  
     0.419
vapC
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.417
Amir_6794
KEGG: pap:PSPA7_0575 hypothetical protein.
  
     0.415
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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