STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1408PFAM: protein of unknown function DUF1503. (278 aa)    
Predicted Functional Partners:
Amir_0474
PFAM: protein of unknown function DUF1503; KEGG: scl:sce8705 hypothetical protein.
  
     0.696
Amir_7006
Hypothetical protein; KEGG: cha:CHAB381_0860 GTP-binding protein.
  
     0.569
Amir_1415
PFAM: Heat shock protein 70; KEGG: hha:Hhal_0145 heat shock protein 70.
  
     0.554
Amir_4993
Hypothetical protein.
  
     0.534
Amir_6577
Hypothetical protein; KEGG: GK21128 gene product from transcript GK21128- RA.
  
     0.525
Amir_3648
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein.
 
 
 
 0.513
Amir_0037
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: hypothetical protein.
  
   0.492
Amir_6569
PFAM: Heat shock protein 70; KEGG: mag:amb3024 chaperone protein HscA.
  
     0.469
Amir_5524
PFAM: GCN5-related N-acetyltransferase; KEGG: sil:SPO0965 acetyltransferase.
  
     0.464
Amir_2386
Hypothetical protein.
  
     0.458
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.