STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1443KEGG: hypothetical protein. (183 aa)    
Predicted Functional Partners:
miaB
RNA modification enzyme, MiaB family; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.866
Amir_0113
Hypothetical protein; KEGG: YALI0F05786p.
  
     0.774
Amir_5518
Conserved hypothetical protein.
  
     0.774
Amir_6693
Hypothetical protein.
  
     0.774
Amir_0823
KEGG: dno:DNO_0690 hypothetical protein.
  
     0.773
Amir_1512
Hypothetical protein.
  
     0.773
Amir_0045
Hypothetical protein.
  
     0.772
Amir_1200
Hypothetical protein.
  
     0.771
Amir_1257
Hypothetical protein.
  
     0.769
Amir_1167
Hypothetical protein.
  
     0.766
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.