STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1474KEGG: gbm:Gbem_2014 putative secreted protein. (186 aa)    
Predicted Functional Partners:
Amir_1473
KEGG: aba:Acid345_3970 hypothetical protein.
 
     0.961
Amir_4920
PFAM: cobalamin B12-binding domain protein; KEGG: rpc:RPC_1467 cobalamin B12-binding.
  
     0.565
Amir_4921
Protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation E family protein; GAF domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; KEGG: sus:Acid_6601 serine phosphatase.
  
     0.542
Amir_5334
PFAM: chitin-binding domain 3 protein; Carbohydrate- binding family V/XII; SMART: Carbohydrate-binding family V/XII; KEGG: hypothetical protein.
  
     0.534
Amir_1475
PFAM: protein of unknown function UPF0027; KEGG: scl:sce1307 hypothetical protein.
       0.519
Amir_5172
Putative sensor with HAMP domain; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: rpe:RPE_2275 peptidase C14, caspase catalytic subunit P20.
  
     0.491
Amir_5461
KEGG: cak:Caul_3518 hypothetical protein.
  
     0.474
Amir_1046
PFAM: zinc finger SWIM domain protein; KEGG: mxa:MXAN_7273 SWIM zinc finger domain protein.
  
     0.439
Amir_5170
PFAM: protein of unknown function DUF742; KEGG: Hypothetical protein CBG22207.
  
     0.436
Amir_1248
PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_L_2832 hypothetical protein.
  
     0.432
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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