STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1602PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: scl:sce4229 putative exonuclease. (180 aa)    
Predicted Functional Partners:
Amir_1599
KEGG: dac:Daci_0764 hypothetical protein.
       0.773
Amir_1600
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: dac:Daci_0766 von Willebrand factor type A.
       0.773
Amir_1601
Hypothetical protein.
       0.773
Amir_1603
PFAM: regulatory protein TetR; KEGG: bph:Bphy_4824 TetR family transcriptional regulator.
       0.678
Amir_1598
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: pfo:Pfl01_4696 acyl-CoA dehydrogenase-like.
       0.539
Amir_4225
PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.502
Amir_3321
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: dde:Dde_0483 ATPase.
  
     0.469
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 
  0.467
Amir_4467
KEGG: scl:sce9100 hypothetical protein.
  
     0.464
Amir_3320
KEGG: dvm:DvMF_2570 hypothetical protein.
  
     0.461
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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