STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1673TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: scl:sce5580 putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (292 aa)    
Predicted Functional Partners:
Amir_1672
TIGRFAM: urea ABC transporter, permease protein UrtC; PFAM: inner-membrane translocator; KEGG: scl:sce5581 putative branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
Amir_1674
TIGRFAM: urea ABC transporter, urea binding protein; PFAM: Extracellular ligand-binding receptor; KEGG: scl:sce5579 putative branched-chain amino acid transport system substrate-binding protein.
 
 
 0.999
Amir_1671
KEGG: scl:sce5582 putative ABC transporter ATP- binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.998
Amir_1670
KEGG: rso:RSc2037 ABC transporter ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.997
Amir_5537
PFAM: inner-membrane translocator; KEGG: bbr:BB2027 putative ABC transport protein, ATP-binding component; Belongs to the binding-protein-dependent transport system permease family.
  
 0.979
Amir_5536
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bmj:BMULJ_02460 branched-chain amino acid transport system ATP-binding protein.
  
 0.961
Amir_5535
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_1946 ABC transporter related protein.
  
 0.889
Amir_5539
PFAM: Extracellular ligand-binding receptor; KEGG: azo:azo3730 leucine-specific binding protein.
 
  
 0.885
Amir_0094
SMART: TIR protein; KEGG: vvy:VV1926 hypothetical protein.
  
  
 0.596
Amir_2862
PFAM: Extracellular ligand-binding receptor; KEGG: cvi:CV_0405 amino acid ABC transporter.
  
  
 0.596
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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