STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1712Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: ppu:PP_4065 propionyl-CoA carboxylase. (531 aa)    
Predicted Functional Partners:
Amir_1713
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; protein of unknown function DUF201; biotin/lipoyl attachment domain- containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: bra:BRADO6875 putative biotin carboxylase.
 0.995
Amir_6229
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: mag:amb0674 acetyl-/propionyl-coenzyme A carboxylase alpha chain.
 0.988
Amir_6396
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: biotin carboxylase; K01946 biotin carboxylase.
 
 0.987
Amir_1714
PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: bxe:Bxe_C0513 putative acyl-CoA dehydrogenase.
  
 0.865
Amir_6389
TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin protein ligase domain protein; KEGG: ade:Adeh_2388 biotin--acetyl-CoA-carboxylase ligase.
 
 
 0.835
Amir_6387
PFAM: pyruvate carboxyltransferase; KEGG: rce:RC1_0377 3-hydroxy-3-methylglutaryl-CoA lyase.
 
 0.825
Amir_5973
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
 
 0.772
Amir_4238
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carboxyl transferase; biotin/lipoyl attachment domain- containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: aba:Acid345_0466 carbamoyl-phosphate synthase L chain, ATP-binding.
 
 0.765
Amir_6105
TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: gbm:Gbem_0558 methylmalonyl-CoA epimerase.
  
 
 0.707
Amir_6418
methylmalonyl-CoA mutase, large subunit; KEGG: rru:Rru_A2479 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12- binding domain protein.
     
 0.688
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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