STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1721PFAM: glycosyl transferase family 2; GtrA family protein; KEGG: ppd:Ppro_2693 glycosyl transferase family protein. (424 aa)    
Predicted Functional Partners:
Amir_1722
PFAM: glycosyl transferase family 39; KEGG: bsu:BSU12880 hypothetical protein.
  
 0.954
Amir_1924
PFAM: glycosyl transferase family 39; KEGG: bsu:BSU40490 hypothetical protein.
  
 0.875
Amir_1723
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: sus:Acid_6896 heavy metal sensor signal transduction histidine kinase.
 
 
 
 0.686
Amir_0055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; KEGG: ppf:Pput_3926 glycosyl transferase family protein.
  
  
 0.629
Amir_0133
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbc:CbuK_1550 polysaccharide export ATP- binding protein.
  
  
 0.594
Amir_1301
PFAM: glycosyl transferase family 2; polysaccharide deacetylase; KEGG: mno:Mnod_3023 polysaccharide deacetylase.
  
 
 0.579
Amir_1724
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bat:BAS2056 DNA-binding response regulator.
 
   
 0.570
Amir_2370
KEGG: dal:Dalk_3918 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold- 4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein.
  
 
 0.507
Amir_0799
Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.483
Amir_5693
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
     
 0.482
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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