STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1728PFAM: protein of unknown function DUF742; KEGG: hypothetical protein. (252 aa)    
Predicted Functional Partners:
Amir_0461
PFAM: protein of unknown function ATP binding; KEGG: nmn:NMCC_1665 hypothetical protein.
 
  
 0.878
Amir_5416
PFAM: protein of unknown function ATP binding; Miro domain protein; KEGG: dac:Daci_0776 protein of unknown function ATP binding.
 
  
 0.878
Amir_0459
PFAM: Roadblock/LC7 family protein; KEGG: pna:Pnap_2813 roadblock/LC7 family protein.
 
  
 0.813
Amir_5171
PFAM: Roadblock/LC7 family protein; KEGG: pna:Pnap_0367 roadblock/LC7 family protein.
 
  
 0.813
Amir_5417
PFAM: Roadblock/LC7 family protein; KEGG: pna:Pnap_2813 roadblock/LC7 family protein.
 
  
 0.813
Amir_0458
Putative sensor with HAMP domain; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; Nitrate and nitrite sensing domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: mag:amb3383 methyl-accepting chemotaxis protein.
 
 
 0.808
Amir_5418
Putative sensor with HAMP domain; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dvm:DvMF_1114 methyl-accepting chemotaxis sensory transducer.
 
 
 0.808
Amir_2066
PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: lch:Lcho_0275 histidine kinase.
 
 
 0.805
Amir_4816
PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: hypothetical protein.
 
 
 0.797
Amir_2069
PFAM: protein of unknown function ATP binding; KEGG: dac:Daci_0776 protein of unknown function ATP binding.
 
   
 0.793
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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