STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1739PFAM: O-antigen polymerase; KEGG: mxa:MXAN_3026 O-antigen polymerase family protein. (465 aa)    
Predicted Functional Partners:
Amir_1746
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: pol:Bpro_1890 polysaccharide biosynthesis protein.
 
  
 0.924
Amir_1741
Hypothetical protein; KEGG: sus:Acid_4999 peptidase S9B dipeptidylpeptidase IV subunit.
 
     0.878
Amir_1753
PFAM: glycosyl transferase family 2; KEGG: ank:AnaeK_2727 hypothetical protein.
 
  
 0.858
Amir_1740
Hypothetical protein; KEGG: dvu:DVU0508 translation initiation factor IF- 2.
       0.837
Amir_1735
KEGG: rle:pRL90161 hypothetical protein.
 
     0.795
Amir_1748
KEGG: pat:Patl_2044 hypothetical protein.
 
  
 0.787
Amir_4029
KEGG: rle:pRL90161 hypothetical protein.
  
     0.772
Amir_1730
KEGG: ank:AnaeK_2858 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.733
Amir_1736
PFAM: transferase hexapeptide repeat containing protein; KEGG: acetyltransferase.
 
     0.690
Amir_1731
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_CH01364 oxidoreductase protein.
 
   
 0.676
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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