STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1747PFAM: glycosyl transferase family 2; KEGG: smd:Smed_4802 glycosyl transferase family 2. (352 aa)    
Predicted Functional Partners:
Amir_1746
PFAM: polysaccharide biosynthesis protein; virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: pol:Bpro_1890 polysaccharide biosynthesis protein.
  
 0.966
Amir_1745
KEGG: smd:Smed_4803 glycosyl transferase group 1.
 
    0.932
Amir_1733
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; dTDP-4- dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: rlt:Rleg2_6416 NAD-dependent epimerase/dehydratase.
 
    0.771
Amir_1748
KEGG: pat:Patl_2044 hypothetical protein.
 
     0.753
Amir_1735
KEGG: rle:pRL90161 hypothetical protein.
 
     0.727
Amir_1731
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: ret:RHE_CH01364 oxidoreductase protein.
 
     0.704
Amir_4029
KEGG: rle:pRL90161 hypothetical protein.
  
     0.692
Amir_1730
KEGG: ank:AnaeK_2858 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.679
Amir_1739
PFAM: O-antigen polymerase; KEGG: mxa:MXAN_3026 O-antigen polymerase family protein.
 
  
 0.593
Amir_1736
PFAM: transferase hexapeptide repeat containing protein; KEGG: acetyltransferase.
 
  
 0.519
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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