STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1804KEGG: azo:azo1781 hypothetical protein. (133 aa)    
Predicted Functional Partners:
Amir_4408
PFAM: glycosyl transferase group 1; KEGG: cti:RALTA_A0583 putative glycosyl transferase, group 1.
  
     0.720
Amir_1891
PFAM: glycosyl transferase group 1; KEGG: bpt:Bpet2351 glycosyltransferase.
  
     0.714
Amir_2803
PFAM: glycosyl transferase group 1; KEGG: bmn:BMA10247_A2262 glycosyl transferase, group 1 family protein.
  
     0.679
Amir_1008
KEGG: scl:sce7049 hypothetical protein.
  
     0.651
Amir_1805
PFAM: transcriptional regulator domain protein; KEGG: glo:Glov_0588 two component transcriptional regulator, winged helix family.
       0.613
Amir_1803
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: mrd:Mrad2831_6253 alcohol dehydrogenase.
 
     0.612
Amir_1798
KEGG: afw:Anae109_0147 hypothetical protein.
  
     0.600
Amir_5401
KEGG: mca:MCA0157 hypothetical protein.
 
     0.514
Amir_2309
KEGG: pzu:PHZ_c0782 hypothetical protein.
  
     0.442
Amir_2605
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: tgr:Tgr7_0733 NAD-dependent epimerase/dehydratase.
  
     0.413
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.