STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1853Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: scl:sce3306 ribose/xylose/arabinose/galactoside ABC-type transporter permease; Belongs to the binding-protein-dependent transport system permease family. (323 aa)    
Predicted Functional Partners:
Amir_1855
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rpi:Rpic_4095 periplasmic binding protein/LacI transcriptional regulator.
 0.996
Amir_1854
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bvi:Bcep1808_6551 ABC transporter related.
 0.994
Amir_1852
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: aav:Aave_2249 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.982
Amir_6094
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rbsB; ABC transporter substrate binding protein (ribose); K10439 ribose transport system substrate-binding protein.
 
 0.967
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.870
Amir_1865
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH3441 L-arabinose ABC transporter ATP- binding protein.
 
 0.862
Amir_6092
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: smd:Smed_0345 ABC transporter related.
 
 0.856
Amir_1504
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_1972 ABC transporter related.
 
 0.813
Amir_1040
Monosaccharide-transporting ATPase; KEGG: rpi:Rpic_4074 D-xylose ABC transporter, periplasmic substrate-binding protein.
 
   
 0.698
Amir_3044
TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; KEGG: bph:Bphy_3460 rhamnose ABC transporter, periplasmic rhamnose-binding protein.
 
 0.687
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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