STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araBTIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY; KEGG: bha:BH1872 ribulokinase. (554 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 0.999
Amir_1862
PFAM: class II aldolase/adducin family protein; KEGG: cko:CKO_03636 L-ribulose-5-phosphate 4- epimerase.
 
 
 0.996
Amir_5220
KEGG: sat:SYN_01763 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Orotidine 5'- phosphate decarboxylase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 0.925
Amir_3837
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2233 xylose isomerase domain- containing protein.
     
 0.900
Amir_5056
PFAM: PfkB domain protein; KEGG: bha:BH3724 2-keto-3-deoxygluconate kinase; Belongs to the carbohydrate kinase PfkB family.
     
 0.808
Amir_5479
PFAM: PfkB domain protein; KEGG: bha:BH3724 2-keto-3-deoxygluconate kinase.
     
 0.808
Amir_1145
TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: mca:MCA0043 ribose 5-phosphate isomerase B.
    
  0.806
Amir_2648
TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: similar to ribose 5-phosphate isomerase; K01808 ribose 5-phosphate isomerase B.
    
  0.806
Amir_0003
TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; NADP oxidoreductase coenzyme F420-dependent; KEGG: dde:Dde_3470 6-phosphogluconate dehydrogenase- like protein.
     
  0.800
Amir_5683
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
     
  0.800
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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