Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Amir_1921 | Amir_2337 | Amir_1921 | Amir_2337 | Hypothetical protein. | PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel. | 0.459 |
Amir_1921 | Amir_2346 | Amir_1921 | Amir_2346 | Hypothetical protein. | TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: bha:BH2457 flagellar motor switch protein G. | 0.459 |
Amir_1921 | Amir_2350 | Amir_1921 | Amir_2350 | Hypothetical protein. | Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 0.459 |
Amir_1921 | Amir_2370 | Amir_1921 | Amir_2370 | Hypothetical protein. | KEGG: dal:Dalk_3918 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold- 4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein. | 0.873 |
Amir_1921 | Amir_2555 | Amir_1921 | Amir_2555 | Hypothetical protein. | KEGG: met:M446_2712 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein. | 0.430 |
Amir_1921 | Amir_3736 | Amir_1921 | Amir_3736 | Hypothetical protein. | Putative PAS/PAC sensor protein; KEGG: met:M446_3626 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; GAF domain protein; PAS fold-3 domain protein; Sulfate transporter/antisigma-factor antagonist STAS; PAS fold-4 domain protein; PAS fold domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein. | 0.810 |
Amir_1921 | Amir_3954 | Amir_1921 | Amir_3954 | Hypothetical protein. | Multi-sensor signal transduction histidine kinase; KEGG: cti:RALTA_B0128 putative multi-site sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; protein phosphatase 2C domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein. | 0.500 |
Amir_1921 | Amir_6278 | Amir_1921 | Amir_6278 | Hypothetical protein. | KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein. | 0.465 |
Amir_1921 | Amir_6472 | Amir_1921 | Amir_6472 | Hypothetical protein. | PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: swi:Swit_0717 FO synthase. | 0.459 |
Amir_1921 | flgK | Amir_1921 | Amir_2357 | Hypothetical protein. | TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: ppd:Ppro_3455 flagellar hook-associated protein FlgK. | 0.459 |
Amir_2337 | Amir_1921 | Amir_2337 | Amir_1921 | PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel. | Hypothetical protein. | 0.459 |
Amir_2337 | Amir_2346 | Amir_2337 | Amir_2346 | PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel. | TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: bha:BH2457 flagellar motor switch protein G. | 0.991 |
Amir_2337 | Amir_2350 | Amir_2337 | Amir_2350 | PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel. | Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body. | 0.986 |
Amir_2337 | Amir_2370 | Amir_2337 | Amir_2370 | PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel. | KEGG: dal:Dalk_3918 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; PAS fold- 4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein. | 0.954 |
Amir_2337 | Amir_2555 | Amir_2337 | Amir_2555 | PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel. | KEGG: met:M446_2712 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein. | 0.719 |
Amir_2337 | Amir_3736 | Amir_2337 | Amir_3736 | PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel. | Putative PAS/PAC sensor protein; KEGG: met:M446_3626 signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; GAF domain protein; PAS fold-3 domain protein; Sulfate transporter/antisigma-factor antagonist STAS; PAS fold-4 domain protein; PAS fold domain protein; SMART: protein phosphatase 2C domain protein; PAC repeat-containing protein; GAF domain protein; PAS domain containing protein. | 0.956 |
Amir_2337 | Amir_3954 | Amir_2337 | Amir_3954 | PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel. | Multi-sensor signal transduction histidine kinase; KEGG: cti:RALTA_B0128 putative multi-site sensor histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; protein phosphatase 2C domain protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing protein; ATP-binding region ATPase domain protein. | 0.909 |
Amir_2337 | Amir_6278 | Amir_2337 | Amir_6278 | PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel. | KEGG: tbd:Tbd_1456 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; PAS domain containing protein. | 0.780 |
Amir_2337 | Amir_6472 | Amir_2337 | Amir_6472 | PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel. | PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: swi:Swit_0717 FO synthase. | 0.432 |
Amir_2337 | flgK | Amir_2337 | Amir_2357 | PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel. | TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: ppd:Ppro_3455 flagellar hook-associated protein FlgK. | 0.984 |
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