STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1976Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase. (679 aa)    
Predicted Functional Partners:
Amir_2576
Beta-galactosidase; PFAM: glycoside hydrolase family 35; Glycoside hydrolase family 42 domain protein; KEGG: glb1l; galactosidase, beta 1-like.
 
  
  0.918
Amir_0617
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase.
  
  
 
0.913
Amir_4634
PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 42 domain 5 loop region; Glycosyl hydrolase family 98 putative carbohydrate binding module; glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; LamG domain protein jellyroll fold domain protein; KEGG: sus:Acid_4607 beta-galactosidase.
   
 0.912
Amir_0523
PFAM: Aldose 1-epimerase; KEGG: sfv:SFV_3620 putative aldose-1-epimerase.
  
 
 0.911
Amir_2173
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: bha:BH3701 beta-galactosidase.
  
  
 
0.911
Amir_6181
PFAM: glycoside hydrolase clan GH-D; KEGG: esa:ESA_03854 hypothetical protein.
 
  
 0.888
Amir_1979
PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3560 AlgQ1, putative multiple sugar transport system substrate-binding protein.
 
     0.860
Amir_1978
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 39; KEGG: bha:BH1068 beta-xylosidase.
 
   
 0.825
Amir_1981
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.
 
    0.809
Amir_1977
KEGG: afw:Anae109_4026 glycosyltransferase 36.
  
    0.796
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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