STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1998PFAM: dTDP-4-dehydrorhamnose reductase; NAD- dependent epimerase/dehydratase; KEGG: acp:A2cp1_4446 dTDP-4-dehydrorhamnose reductase. (302 aa)    
Predicted Functional Partners:
Amir_6347
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: dvm:DvMF_0141 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.969
Amir_6654
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.962
Amir_1732
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.954
Amir_6280
KEGG: ecw:EcE24377A_2329 dTDP-4-dehydrorhamnose 3,5- epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related.
 
  
 0.952
Amir_1995
PFAM: Alcohol dehydrogenase GroES domain protein; KEGG: scl:sce5062 hypothetical protein.
 
  
 0.825
Amir_1996
PFAM: aminotransferase class-III; KEGG: sat:SYN_01215 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.817
Amir_1997
PFAM: glycosyl transferase family 20; KEGG: ank:AnaeK_0483 HAD-superfamily hydrolase, subfamily IIB.
     
 0.777
Amir_2001
PFAM: Xylose isomerase domain protein TIM barrel; ATPase BadF/BadG/BcrA/BcrD type; KEGG: vei:Veis_3268 xylose isomerase domain protein TIM barrel.
 
   
 0.702
Amir_0054
PFAM: glycosyl transferase family 2; KEGG: rce:RC1_0824 glycosyl transferase family protein.
 
  
 0.697
Amir_2002
PFAM: Nucleotidyl transferase; KEGG: cja:CJA_3254 glucose-1-phosphate adenylyltransferase.
     
 0.685
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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