STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2064KEGG: aav:Aave_4523 superoxide dismutase. (322 aa)    
Predicted Functional Partners:
Amir_2065
Hypothetical protein.
       0.693
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.557
Amir_0222
PFAM: Catalase domain protein; KEGG: eta:ETA_17240 catalase; Belongs to the catalase family.
   
 
 0.553
Amir_2517
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 
 0.553
Amir_4417
PFAM: Catalase domain protein; KEGG: ppd:Ppro_1932 catalase.
   
 
 0.553
Amir_2063
Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: GK24882 gene product from transcript GK24882- RA.
       0.508
Amir_2552
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: scl:sce6060 hypothetical protein.
  
     0.505
Amir_3211
KEGG: rce:RC1_3059 hypothetical protein.
  
     0.496
Amir_3327
PFAM: asparagine synthase; KEGG: swi:Swit_4548 asparagine synthase.
  
     0.496
Amir_2066
PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: lch:Lcho_0275 histidine kinase.
       0.469
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.