STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2339PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body rod protein; KEGG: bha:BH2449 flagellar basal body rod protein FlgG. (276 aa)    
Predicted Functional Partners:
Amir_2347
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
 
 0.997
Amir_2349
PFAM: protein of unknown function DUF1078 domain protein; KEGG: efe:EFER_1855 flagellar component of cell- proximal portion of basal-body rod.
 
 
 0.997
Amir_2340
PFAM: flagellar hook capping protein; KEGG: rpe:RPE_1177 flagellar basal body rod modification protein.
 
 
 0.996
Amir_2350
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
 
 0.996
fliQ
Export protein FliQ family 3; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
 
 
 0.995
Amir_2346
TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: bha:BH2457 flagellar motor switch protein G.
 
  
 0.993
fliE
PFAM: flagellar hook-basal body complex protein FliE; KEGG: pca:Pcar_1193 flagellar hook-basal body complex protein FliE.
 
 
 0.991
Amir_2333
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: bvi:Bcep1808_0049 flagellar motor switch protein FliN.
 
  
 0.990
Amir_2334
PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: hhe:HH1147 flagellar motor switch protein FliM.
 
  
 0.990
Amir_2337
PFAM: MotA/TolQ/ExbB proton channel; KEGG: glo:Glov_0031 MotA/TolQ/ExbB proton channel.
 
  
 0.990
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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