STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2415Hypothetical protein. (195 aa)    
Predicted Functional Partners:
Amir_2414
PFAM: nitroreductase; KEGG: rce:RC1_3281 hypothetical protein.
 
     0.687
Amir_2416
PFAM: UspA domain protein; KEGG: hha:Hhal_2190 UspA domain protein.
 
     0.607
Amir_0321
PFAM: protein of unknown function DUF1203; KEGG: rle:RL1972 hypothetical protein.
  
     0.493
Amir_6489
PFAM: Domain of unknown function DUF1918.
  
     0.482
Amir_6794
KEGG: pap:PSPA7_0575 hypothetical protein.
  
     0.460
Amir_5369
Putative transmembrane anti-sigma factor; KEGG: ank:AnaeK_0242 Fe-S oxidoreductase.
  
     0.437
Amir_4993
Hypothetical protein.
  
     0.436
Amir_3595
Putative transcriptional regulator, PucR family; KEGG: bha:BH1072 hypothetical protein.
  
     0.435
Amir_1496
Putative transcriptional regulator, PucR family; KEGG: bha:BH1072 hypothetical protein.
  
     0.422
Amir_1917
PFAM: nitroreductase; KEGG: rce:RC1_3281 hypothetical protein.
 
     0.422
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.