STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2425KEGG: prw:PsycPRwf_0069 cholesterol oxidase. (543 aa)    
Predicted Functional Partners:
Amir_1710
Hypothetical protein; KEGG: dal:Dalk_2661 wyosine base formation.
  
     0.565
Amir_0479
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: afw:Anae109_2037 HAD family hydrolase.
  
     0.499
Amir_2426
PFAM: Ion transport protein; KEGG: tmz:Tmz1t_1575 ion transport protein.
       0.497
Amir_6320
Hypothetical protein.
  
     0.493
Amir_4926
KEGG: bxe:Bxe_B2117 CdaR family transcriptional regulator.
 
     0.446
Amir_4452
SMART: regulatory protein LuxR; KEGG: nha:Nham_1032 LuxR family transcriptional regulator.
  
     0.445
Amir_6628
KEGG: fibrocystin-L-like protein.
  
 
 0.444
Amir_5574
PFAM: C-5 cytosine-specific DNA methylase; KEGG: vei:Veis_3654 C-5 cytosine-specific DNA methylase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
     0.443
Amir_4289
Dyp-type peroxidase family; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family.
      
 0.433
Amir_5342
TIGRFAM: Dyp-type peroxidase family; KEGG: aba:Acid345_1379 hypothetical protein.
      
 0.433
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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