STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2428PFAM: FAD linked oxidase domain protein; KEGG: scl:sce0752 putative glycolate oxidase. (455 aa)    
Predicted Functional Partners:
Amir_2005
KEGG: rce:RC1_2688 malate synthase A; TIGRFAM: malate synthase A; PFAM: malate synthase; Belongs to the malate synthase family.
  
 
 0.912
Amir_5942
KEGG: mxa:MXAN_6441 malate synthase; TIGRFAM: malate synthase A; PFAM: malate synthase; Belongs to the malate synthase family.
  
 
 0.912
Amir_0222
PFAM: Catalase domain protein; KEGG: eta:ETA_17240 catalase; Belongs to the catalase family.
   
 0.911
Amir_2517
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.911
Amir_4417
PFAM: Catalase domain protein; KEGG: ppd:Ppro_1932 catalase.
   
 0.911
Amir_1422
KEGG: sil:SPO3031 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase.
   
 
 0.907
Amir_4307
PFAM: FAD linked oxidase domain protein; KEGG: scl:sce0752 putative glycolate oxidase.
  
  
 
0.906
Amir_2006
TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; KEGG: sml:Smlt0232 putative isocitrate lyase.
     
 0.905
Amir_6927
PFAM: FAD linked oxidase domain protein; KEGG: scl:sce0752 putative glycolate oxidase.
  
  
 
0.904
Amir_0479
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: afw:Anae109_2037 HAD family hydrolase.
    
 0.903
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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