STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2534PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_CH00696 alpha-glucoside ABC transporter, substrate-binding protein. (404 aa)    
Predicted Functional Partners:
Amir_0351
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rlt:Rleg2_5484 ABC transporter related; Belongs to the ABC transporter superfamily.
  
 0.904
Amir_0810
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: noc:Noc_0279 ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
  
 0.904
Amir_2532
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: mpo:Mpop_1395 LPXTG-motif cell wall anchor domain protein.
       0.689
Amir_2533
Hypothetical protein; KEGG: GK23348 gene product from transcript GK23348- RA.
       0.617
Amir_2531
PFAM: tyrosine protein kinase; SMART: serine/threonine protein kinase; KEGG: scl:sce5109 protein kinase.
 
   
 0.528
Amir_2530
Hypothetical protein; KEGG: mxa:MXAN_5493 WD domain G-beta repeat protein.
       0.503
Amir_0614
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_2010 binding-protein-dependent transport systems inner membrane component.
 
 
 0.447
Amir_2535
PFAM: cytochrome P450; KEGG: hypothetical protein.
       0.427
Amir_1787
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1926 sugar transport system (permease).
 
 
 0.414
Amir_2404
PFAM: extracellular solute-binding protein family 1; KEGG: mmw:Mmwyl1_2762 extracellular solute-binding protein.
  
     0.408
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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