STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2666PFAM: extracellular solute-binding protein family 5; KEGG: acr:Acry_1185 extracellular solute-binding protein. (617 aa)    
Predicted Functional Partners:
Amir_2667
PFAM: sodium/hydrogen exchanger; KEGG: mno:Mnod_3112 sodium/hydrogen exchanger.
 
     0.806
Amir_2663
PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; phosphoribosylglycinamide synthetase; KEGG: plu:plu0116 hypothetical protein.
 
     0.767
Amir_2668
PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; RimK domain protein ATP-grasp; KEGG: plu:plu0116 hypothetical protein.
 
     0.695
Amir_2665
KEGG: gbm:Gbem_0509 hypothetical protein.
 
     0.675
Amir_4928
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2742 binding-protein-dependent transport systems inner membrane component.
  
 
 0.607
Amir_2669
PFAM: major facilitator superfamily MFS_1; KEGG: ank:AnaeK_4388 major facilitator superfamily MFS_1.
 
     0.542
Amir_1954
TIGRFAM: LPXTG-motif cell wall anchor domain protein; KEGG: hypothetical protein.
  
     0.528
Amir_3178
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: GK24882 gene product from transcript GK24882- RA.
  
     0.515
Amir_6186
PFAM: ABC transporter related; binding-protein- dependent transport systems inner membrane component; SMART: AAA ATPase; KEGG: mxa:MXAN_6553 putative oligopeptide/dipeptide ABC transporter, permease/ATP-binding protein.
  
 
 0.506
Amir_2662
Methionine--tRNA ligase; PFAM: tRNA synthetase class I (M); KEGG: pen:PSEEN0982 methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.499
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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