STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2718TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: gdj:Gdia_2404 drug resistance transporter, EmrB/QacA subfamily. (467 aa)    
Predicted Functional Partners:
Amir_2717
Phospho-2-dehydro-3-deoxyheptonate aldolase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
       0.790
Amir_2719
TIGRFAM: amino acid adenylation domain protein; non- ribosomal peptide synthase; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: pap:PSPA7_2858 peptide synthase.
       0.779
Amir_6047
PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_3895 major facilitator transporter.
  
     0.764
Amir_2723
PFAM: periplasmic binding protein; KEGG: bsu:BSU39610 hypothetical protein.
 
     0.676
Amir_0676
4-phytase; PFAM: extracellular solute-binding protein family 5; KEGG: bsu:BSU11430 oligopeptide ABC transporter (binding protein).
   
    0.655
Amir_2722
PFAM: transport system permease protein; KEGG: cvi:CV_2236 iron-enterobactin transporter membrane protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.578
Amir_2720
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dac:Daci_3149 ABC transporter related.
       0.570
Amir_2721
PFAM: transport system permease protein; KEGG: yen:YE3620 iron-enterobactin transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.570
Amir_2724
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: cti:RALTA_B1102 siderophore-interacting protein.
 
     0.569
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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