STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2774KEGG: rso:RS02209 putative transmembrane protein. (242 aa)    
Predicted Functional Partners:
Amir_2773
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: bid:Bind_3241 ECF subfamily RNA polymerase sigma-24 factor.
   0.986
Amir_3527
Hypothetical protein.
  
     0.660
Amir_0365
Hypothetical protein; KEGG: YALI0C03894p.
 
     0.652
Amir_2775
PFAM: GCN5-related N-acetyltransferase; KEGG: bcm:Bcenmc03_1936 GCN5-related N- acetyltransferase.
       0.628
Amir_5519
Conserved hypothetical protein.
  
     0.589
Amir_0542
PFAM: cell divisionFtsK/SpoIIIE; KEGG: bpt:Bpet4245 hypothetical protein.
  
     0.561
Amir_1393
Hypothetical protein; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.547
Amir_0553
PFAM: AIG2 family protein; KEGG: pae:PA4164 hypothetical protein.
  
     0.545
Amir_5485
PFAM: acyltransferase 3; KEGG: maq:Maqu_3475 acyltransferase 3.
  
     0.529
Amir_6536
Hypothetical protein.
  
     0.486
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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