STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2860KEGG: mxa:MXAN_2224 hypothetical protein. (245 aa)    
Predicted Functional Partners:
Amir_4347
Putative signal transduction protein with Nacht domain; SMART: AAA ATPase; KEGG: scl:sce3623 hypothetical protein.
  
     0.646
Amir_2990
KEGG: bcb:BCB4264_A3230 hypothetical cytosolic protein.
  
     0.612
Amir_2891
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: swi:Swit_1768 regulatory protein, TetR.
  
     0.489
Amir_2597
PFAM: regulatory protein TetR; KEGG: pla:Plav_0388 TetR family transcriptional regulator.
  
     0.471
Amir_2889
PFAM: regulatory protein TetR; KEGG: pla:Plav_0388 TetR family transcriptional regulator.
  
     0.458
Amir_4866
PFAM: NHL repeat containing protein; KEGG: bxe:Bxe_C0275 hypothetical protein.
  
     0.451
Amir_3488
KEGG: afw:Anae109_3510 hypothetical protein.
  
     0.437
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.